Basics of Philogenesis
General data
Course ID: | WB-BI-EOP-10cw |
Erasmus code / ISCED: |
13.1
|
Course title: | Basics of Philogenesis |
Name in Polish: | Podstawy filogenezy |
Organizational unit: | Faculty of Biology and Environmental Sciences |
Course groups: | |
ECTS credit allocation (and other scores): |
0 OR
2.00
(depends on study program)
|
Language: | Polish |
(in Polish) Dyscyplina naukowa, do której odnoszą się efekty uczenia się: | biological sciences |
Subject level: | elementary |
Learning outcome code/codes: | BI1_W01 BI1_W04 BI1_W05 BI1_W08 BI1_U01 BI1_U02 BI1_U07 BI1_U11 BI1_K07 |
Short description: |
The student will be familiarized with the basic knowledge of systematics, phylogeny and animal classification. The proposed subject includes the comparison of classical and molecular methods of phylogeny reconstruction. |
Full description: |
How to use GenBank databases and how search for sequences data in the programme Blast. GeneDoc - how edit sequences. Clustal X - sequence alignment. Methods for building phylogenetic trees . MEGA program -how to study the genetic mechanisms of evolutionary processes. Phylogenesis of apes based on the sequence of mitochondrial genes (cytB). Parsymony method in phylogenetics. Construction of phylogenetic tree based on the rRNA gene sequence of small ribosomal subunit (18SRNA). Assessment of the reliability of phylogenetic trees by self-sampling. Models of DNA and protein sequence evolution. Calculation of distances between sequences. Paup phylogenetic analysis program. Maximum likelihood method and choice of DNA sequence evolution model with PartitionFinder. MrBayes program and Bayesian approach to phylogenetic analysis. BEAST - dating of human phylogeny along with reconstruction of evolution of human and primate morphological features. |
Bibliography: |
Barry G. Hall. Łatwe drzewa filogenetyczne |
Efekty kształcenia i opis ECTS: |
BI1_U01, BI1_U02, BI1_U09, BI1_K01, BI1_K03 Participation in exercises and passing the test is the basis for receiving ETCS points |
Assessment methods and assessment criteria: |
Assessment credit - verification of learning outcomes through the worksheets checking acquired skills, part of the worksheets are open questions. The final grade depends on the points from the worksheets; to get 3 (sufficient) - min. 60% is required, for 4 (good) - min. 75%, out of 5 (very good) - min. 90%. Class attendance - two absences are admitted per semester, in special cases (hospital, special random accidents) three absences can be accepted. Three absences - lowering the grade by 0.5, more absences - incomplete, failed classes. Activity and preparation for each class (possibility of raising the grade by 0.5). Part of the learning is a remote form. |
Classes in period "Summer semester 2021/22" (past)
Time span: | 2022-02-01 - 2022-06-30 |
Navigate to timetable
MO TU CW
CW
W TH FR |
Type of class: |
Classes, 30 hours
|
|
Coordinators: | Monika Fajfer-Jakubek | |
Group instructors: | Monika Fajfer-Jakubek | |
Course homepage: | https://teams.microsoft.com/l/team/19%3a465aa43d36c04b078ee047d6f794473c%40thread.tacv2/conversations?groupId=690398d0-00b2-4723-b5c5-32e2ea89fbde&tenantId=12578430-c51b-4816-8163-c7281035b9b3 | |
Students list: | (inaccessible to you) | |
Examination: | graded credit | |
(in Polish) E-Learning: | (in Polish) E-Learning |
|
Type of subject: | optional with unlimited choices |
|
(in Polish) Grupa przedmiotów ogólnouczenianych: | (in Polish) nie dotyczy |
|
Short description: |
(in Polish) Student opanuje podstawową wiedzę z zakresu systematyki, filogenezy i klasyfikacji zwierząt. Proponowany przedmiot dotyczy porównania klasycznych oraz molekularnych metod rekonstrukcji filogenezy. |
|
Wymagania wstępne: |
(in Polish) Podstawowa wiedza z zakresu systematyki, zoologii, botaniki. |
Classes in period "Summer semester 2022/23" (past)
Time span: | 2023-02-01 - 2023-06-30 |
Navigate to timetable
MO TU CW
W TH FR |
Type of class: |
Classes, 30 hours
|
|
Coordinators: | Monika Fajfer-Jakubek | |
Group instructors: | Monika Fajfer-Jakubek | |
Students list: | (inaccessible to you) | |
Examination: | graded credit | |
(in Polish) E-Learning: | (in Polish) E-Learning |
|
Type of subject: | optional with unlimited choices |
|
(in Polish) Grupa przedmiotów ogólnouczenianych: | (in Polish) nie dotyczy |
|
Short description: |
(in Polish) Student opanuje podstawową wiedzę z zakresu systematyki, filogenezy i klasyfikacji zwierząt. Proponowany przedmiot dotyczy porównania klasycznych oraz molekularnych metod rekonstrukcji filogenezy. |
|
Wymagania wstępne: |
(in Polish) Podstawowa wiedza z zakresu systematyki, zoologii, botaniki. |
Copyright by Cardinal Stefan Wyszynski University in Warsaw.