Uniwersytet Kardynała Stefana Wyszyńskiego w Warszawie - Centralny System Uwierzytelniania
Strona główna

Molecular biology of plants (lecture)

Informacje ogólne

Kod przedmiotu: WB-BI-ANG-45
Kod Erasmus / ISCED: 13.1 Kod klasyfikacyjny przedmiotu składa się z trzech do pięciu cyfr, przy czym trzy pierwsze oznaczają klasyfikację dziedziny wg. Listy kodów dziedzin obowiązującej w programie Socrates/Erasmus, czwarta (dotąd na ogół 0) – ewentualne uszczegółowienie informacji o dyscyplinie, piąta – stopień zaawansowania przedmiotu ustalony na podstawie roku studiów, dla którego przedmiot jest przeznaczony. / (brak danych)
Nazwa przedmiotu: Molecular biology of plants (lecture)
Jednostka: Wydział Biologii i Nauk o Środowisku
Grupy: Biology: 1th degree
Grupa przedmiotów - oferta Erasmus
Punkty ECTS i inne: 4.00 LUB 2.00 (zmienne w czasie) Podstawowe informacje o zasadach przyporządkowania punktów ECTS:
  • roczny wymiar godzinowy nakładu pracy studenta konieczny do osiągnięcia zakładanych efektów uczenia się dla danego etapu studiów wynosi 1500-1800 h, co odpowiada 60 ECTS;
  • tygodniowy wymiar godzinowy nakładu pracy studenta wynosi 45 h;
  • 1 punkt ECTS odpowiada 25-30 godzinom pracy studenta potrzebnej do osiągnięcia zakładanych efektów uczenia się;
  • tygodniowy nakład pracy studenta konieczny do osiągnięcia zakładanych efektów uczenia się pozwala uzyskać 1,5 ECTS;
  • nakład pracy potrzebny do zaliczenia przedmiotu, któremu przypisano 3 ECTS, stanowi 10% semestralnego obciążenia studenta.

zobacz reguły punktacji
Język prowadzenia: angielski
Poziom przedmiotu:

średnio-zaawansowany

Symbol/Symbole kierunkowe efektów uczenia się:

BI1_W03, BI1_W04, BI1_W05,


Wymagania wstępne:

Basics of molecular biology and genetics at the level of the third year of Biology or related studies.

Skrócony opis:

The aim of the course is to discuss the molecular mechanisms underlying the most important developmental processes in plants. Exercises have the character of computer classes and introduce bioinformatics and population genetics of plant organisms based on DNA and protein analysis.

Pełny opis:

The lecture content includes 1. Basics of plant genomics - the main molecular techniques used in the analysis of plant genetic variability, including: PCR-based genetic markers, sequencing, and analysis of gene expression in DNA microarrays. 2. Molecular regulation of the cell cycle - a reminder of the role of DNA, RNA, proteins, fatty acids, polysaccharides in the plant life cycle. 3. Regulation of the plant development process - transport of metabolites, hormone biosynthesis, cell signalling, senescence and cell death. 4. Analysis of genes encoding basic enzymes and building blocks of plant cells - signalling molecules and protein receptors. 5. Basics of plant population genetics - analysis of DNA polymorphism and proteins of related species, phylogenesis, Hardy-Weinberg equilibrium law in plant populations. 6. Proteomics and protein homology analysis. 7. Plant genetic engineering - application of transgenic plants (GMOs) in agriculture, industry and pharmacy. 8. Molecular basis of plant genome editing. 9. Ethical problems related to modern plant biotechnology. 10. Metabolomics - detection of basic secondary metabolites in plants. 11. Plant-environment interactions, including the molecular basis of plant defence reactions to biotic (pathogen attack) and abiotic (physical or chemical stress) factors. 12. Genetic structure and gene flow in forest tree populations. 13. Plant allergens. 14. Basics of forensic botany based on molecular analysis of the genome.

Exercises rely on computer analysis of the sequence, function, and structure of proteins. Students calculate algorithms for alignment and comparison of amino acid and nucleotide sequences, construct phylogenetic trees and learn methods for calculating the frequency, heterozygosity, and inbreeding of plant populations, and also perform PCoA and phylogenetic analysis of the studied species.

Literatura:

Compulsory literature:

1. Biochemistry & Molecular Biology of Plants. Ed. B.B. Buchanan, W. Gruissem, and R.L. Jones. Wiley Blackwell, American Society of Plant Biologists, 2018.

2. Agrobiotechnology. Ed. K. Kowalczyk. Ed. University of Life Sciences in Lublin, Lublin 2013

3. Molecular biotechnology: genetic modifications, advances, problems. J. Buchowicz. PWN, 2nd edition, 2009.

4. Plant biotechnology. Ed. S. Malepszy. PWN, Warsaw 2009.

5. Easy phylogenetic trees. User guide. B.G. Ball, WUW, 2008.

6. GMO in the light of the latest research. Ed. K. Niemirowicz-Szczytt. SGGW, Warsaw 2012.

7. Basics of population genetics. Ed. D.L. Hartl, A.G. Clark. WUW, Warsaw, 2009.

8. Proteomics and metabolomics. Ed. A. Kraj, A. Drabik, J. Silberring, WUW, Warsaw 2010.

Supplementary literature:

9. Molecular biology. Short lectures. P.C. Turner, A.G. McLennan, A.D. Bates, M.R.H. White. PWN SA, Warsaw, 2012.

10. Genetics. Short lectures. P.C. Winter, G.I. Hickey, H.L Fletcher. PWN Warsaw, 2004.

11. Molecular markers, natural history and evolution. J.C. Avise. WUW, Warsaw, 2008.

12. Basics of biotechnology. C. Ratledge, B. Kristiansen. PWN, Warsaw 2011.

13. Current scientific publications proposed by the lecturer.

Efekty kształcenia i opis ECTS:

Subject effect 1: The graduate knows and understands at an advanced level selected facts, objects and complex conditions in the molecular biology of plants, understands the basic phenomena and processes occurring in a plant cell at the molecular level, i.e. DNA, RNA and proteins

Subject effect 2: The graduate knows and understands at an advanced level the most important problems in the field of various branches of biology and in the field of mathematics and chemistry necessary for understanding the basic natural phenomena and processes in plants, and knows their connections with other natural disciplines, such as biochemistry and genetics

Subject effect 3: The graduate knows and understands at an advanced level the basic categories of concepts and terminology used in the molecular biology of plants, and has knowledge of the development of this science and the research methods used in it, incl. analyses based on the detection of differences in the structure of DNA, RNA and proteins

Subject effect 4: The graduate knows and understands the basic techniques and research tools, such as PCR analysis, electrophoretic separation and sequencing, used in the molecular biology of plants, and in the field of computer science and statistics at a level that allows their use for the analysis of genetic polymorphism at the level of genomics and plant proteomics.

Objective effects in terms of skills:

Subject effect 5: The graduate is able to apply basic techniques and research tools in plant molecular biology, conduct observations and perform research analysis based on internet databases in the field of biochemistry, genetics, proteomics and statistics

Subject effect 6: The graduate is able to properly select sources and information derived from them, understands the literature in the field of molecular biology of plants in Polish; reads scientific texts in English with understanding

Subject effect 7: The graduate is able to plan and organize individual work, as well as to cooperate and work in a group, assuming various roles in it, as well as perform the assigned research tasks.

Subject effects in the field of social competencies:

Subject effect 8: The graduate is ready to critically evaluate his knowledge, perceived content and recognize the importance of knowledge in solving cognitive and practical problems in the field of plant molecular biology

Subject effect 9: The graduate is ready to take care of the achievements and traditions of the profession of a molecular plant biologist, is responsible for the safety of his own work and that of others in the field of plant molecular biology.

Subject learning outcomes assigned to lectures (1-3)

Subject learning outcomes assigned to the exercises (4-6)

ECTS [1 ECTS = 30 hours]

Participation in the lecture - 30h

Preparation for the exam - 30h

Participation in exercises - 30h

Preparation for exercises - 10h

Preparation for tests - 10h

Consultation - 10h

Sum: 120h [120/30 = 4]

Metody i kryteria oceniania:

Lecture grade:

Average grade from two partial tests, covering material from lectures.

Test exam consisting of multiple-choice and "true/false" questions.

The condition for admission to the final exam is passing the exercises.

Final rating:

94 - 100% very good (5.0)

88 - 93% good plus (4.5)

80 - 87% good (4)

70 - 79% sufficient plus (3.5)

60 - 69% sufficient (3)

below 59.9% unsatisfactory (2)

For active attendance at the lectures, it is possible to raise the final grade to a higher one if the percentage value obtained for the average of grades or points is, respectively: 58-59% (for grade 3); 67-69% (3.5 rating); 77-79% (per grade 4); 86-87% (4.5 grade) and 92-93% (5 grade).

Exercise grade:

The grade for exercises consists of the average of two grades: the average grade based on the partial grades received during the semester from tests and activity in classes, and the grade from the final colloquium. The classes are passed if the student: (i) actively participated in at least 85% of the classes; (ii) worked during the classes in a way that allowed positive assessment of social skills and competences obtained during the classes (described in the syllabus as subject learning outcomes 4-6).

Scope of colloquium grades:

94 - 100% very good (5.0)

88 - 93% good plus (4.5)

80 - 87% good (4)

70 - 79% sufficient plus (3.5)

60 - 69% sufficient (3)

below 59.9% unsatisfactory (2)

For active participation in classes, it is possible to raise the final grade to a higher one, as in the case of the lecture grade.

Knowledge:

grade 2 (fail): The graduate knows and does not understand the most important problems, terminology and concepts in the field of molecular biology, biochemistry and genetics, concerning the basic phenomena and processes occurring in a plant cell at the level of DNA, RNA and proteins; does not know and understand basic research techniques and tools, such as PCR analysis, electrophoretic separation and sequencing, nor in the field of computer science and statistics at a level that allows them to be used for genetic polymorphism analyzes at the level of plant genomics and proteomics

grade 3 (sufficient): A graduate at the basic level knows and understands the most important problems, terminology and concepts in the field of molecular biology, biochemistry and genetics, concerning the basic phenomena and processes occurring in a plant cell at the level of DNA, RNA and proteins; knows the basic research techniques and tools, such as PCR analysis, electrophoretic separation and sequencing, as well as tools in computer science and statistics at a level that allows them to be used for genetic polymorphism analyzes at the level of plant genomics and proteomics

grade 4 (good): The graduate knows and understands the most important problems, terminology and concepts in the field of molecular biology, biochemistry and genetics at a good level, concerning the basic phenomena and processes occurring in a plant cell at the level of DNA, RNA and proteins; knows the basic research techniques and tools, such as PCR analysis, electrophoretic separation and sequencing, as well as computer science and statistics tools at a level that allows them to be used for genetic polymorphism analyzes at the level of plant genomics and proteomics

5 (very good): The graduate knows and understands the most important problems, terminology and concepts in the field of molecular biology, biochemistry and genetics at a very good level, concerning the basic phenomena and processes occurring in a plant cell at the level of DNA, RNA and proteins; knows very well the basic techniques and research tools, such as PCR analysis, electrophoretic separation and sequencing, as well as computer science and statistics tools at a level that allows them to be used for genetic polymorphism analyzes at the level of plant genomics and proteomics

Skills:

grade 2 (fail): The graduate is not able to properly select sources based on online databases in the field of biochemistry, genetics and proteomics, understands literature in the field of plant molecular biology in Polish at all and does not read scientific texts in Polish with understanding English; cannot plan and organize individual work or cooperate and work in a group, assuming different roles in it, and is unable to perform research tasks commissioned by the teacher

grade 3 (sufficient): The graduate at the basic level is able to properly select sources based on online databases in the field of biochemistry, genetics and proteomics, at the basic level understands literature in the field of plant molecular biology in Polish and reads scientific texts with understanding in English; at a basic level, is able to plan and organize individual work as well as cooperate and work in a group, assuming various roles in it, as well as perform research tasks commissioned by the teacher

for the grade 4 (good): A graduate at a good level is able to properly select sources based on online databases in the field of biochemistry, genetics and proteomics, has a good understanding of literature in the field of plant molecular biology in Polish and reads scientific texts in English with understanding ; is able to plan and organize individual work well, as well as cooperate and work in a group, assuming various roles in it, and also performs well the research tasks commissioned by the teacher

for the grade 5 (very good): The graduate is able to properly select sources based on online databases in the field of biochemistry, genetics and proteomics at a very good level, understands the literature in the field of plant molecular biology in Polish very well and reads scientific texts with understanding in English; is able to plan and organize individual work very well, as well as cooperate and work in a group, assuming various roles in it, and also performs research tasks commissioned by the teacher very well.

Competences:

grade 2 (fail): The graduate is not at all ready to critically assess his knowledge, perceived content and does not recognize the importance of knowledge in solving cognitive and practical problems in the field of plant molecular biology

for the grade 3 (superior): A graduate at the basic level is ready to critically assess his knowledge, perceived content and sufficiently recognizes the importance of knowledge in solving cognitive and practical problems in the field of plant molecular biology

Zajęcia w cyklu "Semestr letni 2021/22" (zakończony)

Okres: 2022-02-01 - 2022-06-30
Wybrany podział planu:
Przejdź do planu
Typ zajęć:
Wykład, 30 godzin więcej informacji
Koordynatorzy: Justyna Nowakowska
Prowadzący grup: Justyna Nowakowska
Lista studentów: (nie masz dostępu)
Zaliczenie: Przedmiot - Egzaminacyjny
Wykład - Egzaminacyjny
Typ przedmiotu:

obowiązkowy

Grupa przedmiotów ogólnouczenianych:

nie dotyczy

Skrócony opis:

The aim of the course is to discuss the molecular mechanisms underlying the most important developmental processes in plants. Exercises have the character of computer classes and introduce bioinformatics and population genetics of plant organisms based on DNA and protein analysis.

Pełny opis: (tylko po angielsku)

The lecture content includes 1. Basics of plant genomics - the main molecular techniques used in the analysis of plant genetic variability, including: PCR-based genetic markers, sequencing, and analysis of gene expression in DNA microarrays. 2. Molecular regulation of the cell cycle - a reminder of the role of DNA, RNA, proteins, fatty acids, polysaccharides in the plant life cycle. 3. Regulation of the plant development process - transport of metabolites, hormone biosynthesis, cell signalling, senescence and cell death. 4. Analysis of genes encoding basic enzymes and building blocks of plant cells - signalling molecules and protein receptors. 5. Basics of plant population genetics - analysis of DNA polymorphism and proteins of related species, phylogenesis, Hardy-Weinberg equilibrium law in plant populations. 6. Proteomics and protein homology analysis. 7. Plant genetic engineering - application of transgenic plants (GMOs) in agriculture, industry and pharmacy. 8. Molecular basis of plant genome editing. 9. Ethical problems related to modern plant biotechnology. 10. Metabolomics - detection of basic secondary metabolites in plants. 11. Plant-environment interactions, including the molecular basis of plant defence reactions to biotic (pathogen attack) and abiotic (physical or chemical stress) factors. 12. Genetic structure and gene flow in forest tree populations. 13. Basics of forensic botany based on molecular analysis of the genome.

Literatura: (tylko po angielsku)

Compulsory literature:

1. Biochemistry & amp; Molecular Biology of Plants. Ed. B.B. Buchanan, W. Gruissem, and R.L. Jones. Wiley Blackwell, American Society of Plant Biologists, 2018.

2. Agrobiotechnology. Ed. K. Kowalczyk. Ed. University of Life Sciences in Lublin, Lublin 2013

3. Molecular biotechnology: genetic modifications, advances, problems. J. Buchowicz. PWN, 2nd edition, 2009.

4. Plant biotechnology. Ed. S. Malepszy. PWN, Warsaw 2009.

5. Easy phylogenetic trees. User guide. B.G. Ball, WUW, 2008.

6. GMO in the light of the latest research. Ed. K. Niemirowicz-Szczytt. SGGW, Warsaw 2012.

7. Basics of population genetics. Ed. D.L. Hartl, A.G. Clark. WUW, Warsaw, 2009.

8. Proteomics and metabolomics. Ed. A. Kraj, A. Drabik, J. Silberring, WUW, Warsaw 2010.

Supplementary literature:

9. Molecular biology. Short lectures. P.C. Turner, A.G. McLennan, A.D. Bates, M.R.H. White. PWN SA, Warsaw, 2012.

10. Genetics. Short lectures. P.C. Winter, G.I. Hickey, H.L Fletcher. PWN Warsaw, 2004.

11. Molecular markers, natural history and evolution. J.C. Avise. WUW, Warsaw, 2008.

12. Basics of biotechnology. C. Ratledge, B. Kristiansen. PWN, Warsaw 2011.

13. Current scientific publications proposed by the lecturer.

Wymagania wstępne: (tylko po angielsku)

The lecture is based on multimedia presentations (PowerPoint, films)

Practices are computer classes.

Zajęcia w cyklu "Semestr letni 2022/23" (zakończony)

Okres: 2023-02-01 - 2023-06-30
Wybrany podział planu:
Przejdź do planu
Typ zajęć:
Wykład, 30 godzin więcej informacji
Koordynatorzy: (brak danych)
Prowadzący grup: (brak danych)
Lista studentów: (nie masz dostępu)
Zaliczenie: Egzaminacyjny
Typ przedmiotu:

obowiązkowy

Grupa przedmiotów ogólnouczenianych:

nie dotyczy

Zajęcia w cyklu "Semestr letni 2023/24" (w trakcie)

Okres: 2024-02-15 - 2024-06-30
Wybrany podział planu:
Przejdź do planu
Typ zajęć:
Wykład, 30 godzin więcej informacji
Koordynatorzy: Justyna Nowakowska
Prowadzący grup: Justyna Nowakowska
Lista studentów: (nie masz dostępu)
Zaliczenie: Egzaminacyjny
Opis nakładu pracy studenta w ECTS:

Lectures:

30h – direct participation in lectures

20h – preparation for the exam

10h – consultations

Total: 60h [60/30=2 ECTS]


Exercises:

30 h – direct participation in exercises

10h – preparation and presentation of calculation results

15h – preparation for the colloquium

5h – consultations

Total: 60h [60/30=2 ECTS]

Typ przedmiotu:

fakultatywny dowolnego wyboru

Grupa przedmiotów ogólnouczenianych:

nie dotyczy

Skrócony opis:

The aim of the course is to discuss the molecular mechanisms underlying the most important developmental processes in plants. Exercises have the character of computer classes and introduce bioinformatics and population genetics of plant organisms based on DNA and protein analysis.

Pełny opis:

The lecture content includes 1. Basics of plant genomics - the main molecular techniques used in the analysis of plant genetic variability, including: PCR-based genetic markers, sequencing, and analysis of gene expression in DNA microarrays. 2. Molecular regulation of the cell cycle - a reminder of the role of DNA, RNA, proteins, fatty acids, polysaccharides in the plant life cycle. 3. Regulation of the plant development process - transport of metabolites, hormone biosynthesis, cell signalling, senescence and cell death. 4. Analysis of genes encoding basic enzymes and building blocks of plant cells - signalling molecules and protein receptors. 5. Basics of plant population genetics - analysis of DNA polymorphism and proteins of related species, phylogenesis, Hardy-Weinberg equilibrium law in plant populations. 6. Proteomics and protein homology analysis. 7. Plant genetic engineering - application of transgenic plants (GMOs) in agriculture, industry and pharmacy. 8. Molecular basis of plant genome editing. 9. Ethical problems related to modern plant biotechnology. 10. Metabolomics - detection of basic secondary metabolites in plants. 11. Plant-environment interactions, including the molecular basis of plant defence reactions to biotic (pathogen attack) and abiotic (physical or chemical stress) factors. 12. Genetic structure and gene flow in forest tree populations. 13. Plant allergens. 14. Basics of forensic botany based on molecular analysis of the genome.

Exercises rely on computer analysis of the sequence, function, and structure of proteins. Students calculate algorithms for alignment and comparison of amino acid and nucleotide sequences, construct phylogenetic trees and learn methods for calculating the frequency, heterozygosity, and inbreeding of plant populations, and also perform PCoA and phylogenetic analysis of the studied species.

Literatura:

Compulsory literature:

1. Biochemistry & Molecular Biology of Plants. Ed. B.B. Buchanan, W. Gruissem, and R.L. Jones. Wiley Blackwell, American Society of Plant Biologists, 2018.

2. Agrobiotechnology. Ed. K. Kowalczyk. Ed. University of Life Sciences in Lublin, Lublin 2013

3. Molecular biotechnology: genetic modifications, advances, problems. J. Buchowicz. PWN, 2nd edition, 2009.

4. Plant biotechnology. Ed. S. Malepszy. PWN, Warsaw 2009.

5. Easy phylogenetic trees. User guide. B.G. Ball, WUW, 2008.

6. GMO in the light of the latest research. Ed. K. Niemirowicz-Szczytt. SGGW, Warsaw 2012.

7. Basics of population genetics. Ed. D.L. Hartl, A.G. Clark. WUW, Warsaw, 2009.

8. Proteomics and metabolomics. Ed. A. Kraj, A. Drabik, J. Silberring, WUW, Warsaw 2010.

Supplementary literature:

9. Molecular biology. Short lectures. P.C. Turner, A.G. McLennan, A.D. Bates, M.R.H. White. PWN SA, Warsaw, 2012.

10. Genetics. Short lectures. P.C. Winter, G.I. Hickey, H.L Fletcher. PWN Warsaw, 2004.

11. Molecular markers, natural history and evolution. J.C. Avise. WUW, Warsaw, 2008.

12. Basics of biotechnology. C. Ratledge, B. Kristiansen. PWN, Warsaw 2011.

13. Current scientific publications proposed by the lecturer.

Opisy przedmiotów w USOS i USOSweb są chronione prawem autorskim.
Właścicielem praw autorskich jest Uniwersytet Kardynała Stefana Wyszyńskiego w Warszawie.
ul. Dewajtis 5,
01-815 Warszawa
tel: +48 22 561 88 00 https://uksw.edu.pl
kontakt deklaracja dostępności USOSweb 7.0.2.0-1 (2024-03-12)